生物信息学相关数据库资源介绍ppt课件

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1、生物信息学生物信息学相关数据库资源引见相关数据库资源引见刘吉平Reference:biosino.org生物信息学相关数据库资源1.核酸及其相关数据库序列数据库、基因组相关数据库、核酸三维构造数据库、其他2.蛋白质相关数据库序列数据库、蛋白质三维构造数据库、蛋白质组数据库二维凝胶电泳数据库、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库3.基因或蛋白质一些特定数据库4.糖类及其相关数据库5.蛋白质翻译后修饰相关数据库6.基因表达数据库7.人类基因突变及疾病相关数据库8.进化相关数据库及资源专利数据库9.资源目录效力器或网页1.核酸及其相关数据库序列数据库、基因组相关数

2、据库、核酸三维构造数据库、其他2.蛋白质相关数据库序列数据库、蛋白质三维构造数据库、蛋白质组数据库二维凝胶电泳数据库、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库3.基因或蛋白质一些特定数据库4.糖类及其相关数据库5.蛋白质翻译后修饰相关数据库6.基因表达数据库7.人类基因突变及疾病相关数据库8.进化相关数据库及资源专利数据库9.资源目录效力器或网页核酸及其相关数据库核酸及其相关数据库 1、核酸序列数据、核酸序列数据库BIOSINO我国的核酸序列公共数据我国的核酸序列公共数据库EMBL-EMBLNucleotidesequencedatabaseEBIGenBank

3、-GenBankNucleotideSequencedatabaseNCBIDDBJ-DNADataBankofJapandbEST-DatabaseofExpressedSequenceTags表达序列表达序列标签NCBIdbSTS-DatabaseofSequenceTaggedSites序列序列标签位点位点NCBI2.基因组及相关数据库GenomicDatabaseslGenomeWebHGMP-AcatalogueofusefulWebsitesforGenomicswithasetofcollectionsofgenomedatabaseslGSDB-GenomeSequenceda

4、tabaseNCGRlGOLD-GenomesOn-linedbl一些数据库的直接链接3.核酸三维构造数据库lNDB-NucleicAcidDatabank3DstructureslBNASDB-NucleicacidstructuredbfromUniversityofPune4.其他lAsDb-AberrantSplicingdb异常拼接异常拼接lACUTS-AncientconserveduntranslatedDNAsequencesdblCodonUsageDb-Thefrequencyofcodonuseineachorganismismadesearchablethroughth

5、isWorldWideWebsite.lEPD-EukaryoticPromoterdb真核启真核启动子子lHOVERGEN-HomologousVertebrateGenesdb同源同源脊椎脊椎动物物lIMGT-ImMunoGeneTicsdbMirroratEBI免疫免疫遗传学学lISIS-IntronSequenceandInformationSystemlRDP-RibosomaldbProjectlgRNAsdb-GuideRNAdblPLACE-Plantcis-actingregulatoryDNAelementsdb5其它核酸数据库其它核酸数据库lPlantCARE-Plant

6、cis-actingregulatoryDNAelementsdblsRNAdb-SmallRNAdblssurRNA-SmallribosomalsubunitdbllsurRNA-Largeribosomalsubunitdbl5SrRNA-5SribosomalRNAdbltmRNAWebsiteltmRDB-tmRNAdBltRNA-tRNAcompilation编辑编辑fromtheUniversityofBayreuthluRNADB-uRNAdb5其他核酸数据库其他核酸数据库lRNAediting-RNAeditingsitelRNAmoddb-RNAmodificationdb

7、lTelDB-MultimediaTelomere端粒ResourcelTRADAT-TRAnscriptionDatabasesandAnalysisToolslSubviralRNAdb-SmallcircularRNAsdbviroidandviroid-like类病毒5Transgenics转基因lCreTransgenicDatabase-CretransgenicmouselineslTransgenic/TargetedMutationDatabase-Informationontransgenicanimalsandtargetedmutations2.蛋白质序列和相关数据库蛋

8、白蛋白质序列数据序列数据库PIR-international -The Protein Information Resource protein sequence 国国际蛋白蛋白质信信息中心,息中心,NBRF+JIPID+MIPs,PIR1PIR2PIR3PIR4 SWISS-PROT - SWISS-PROT annotated注注释 protein sequence db SIB+EBI,EBI创建蛋白建蛋白质专家分析系家分析系统ExPASy,北京,北京MIPS Munich information center for protein sequence 德国慕尼黑蛋白德国慕尼黑蛋白质序列

9、信息中心序列信息中心 蛋白质相关数据库蛋白质相关数据库 lPROSITE-PROSITEdictionaryofproteinsitesandpatternslInterPro-IntegratedResourcesofProteinsDomainsandFunctionalSiteslBLOCKS-BLOCKSdblDOMO-ProteindomaindbAutomaticallygeneratedlPfam-ProteinfamiliesdbHMMderivedMirroratSangerlPRINTS-ProteinMotiffingerprintdblProDom-Proteindom

10、aindbAutomaticallygeneratedlPROTOMAP-Anautomatichierarchical分等级分等级classificationofSWISS-PROTproteinslSBASE-SBASEdomaindbProteindomainsequencelibrarylSMART-ProteinsignallingandextracellulardomainpatternsSimpleModularArchitectureResearchToollProClass-Proteinsequencealignmentsandcurationofproteinfamili

11、es蛋白质三维构造和相关数据库蛋白质三维构造和相关数据库lPDB-ProteinDataBankMirrorsinEBIlBioMagResBankRepository知知识fordataonproteins,peptides,andnucleicacidsfromNMRspectroscopy光光谱学学lSWISS-MODELRepository-AutomaticallygeneratedproteinmodelsdblModBase-DbofcomparativeproteinstructuremodelslCATH-UCLBSMstructuralclassificationofpro

12、teinslSCOP-StructuralclassificationofproteinsMirroratUSA|Israel|Singapore|AustralialMol_R_Us-MoleculesRUs,browserforPDBlBMMDomainServer-BiomolecularModellingLaboratoryICRFproteindomainserverlPRESAGE-Collaborativeresourceforstructuralgenomics蛋白质三维构造和相关数据库蛋白质三维构造和相关数据库 lSBASE-SBASEdomaindbProteindomai

13、nsequencelibrarylSMART-Proteinsignallingandextracellular细胞外细胞外domainpatternsSimpleModularArchitectureResearchToollProClass-ProteinsequencealignmentsandcurationofproteinfamilieslKabat-KabatdbofproteinofimmunologicalinterestlPMD-ProteinMutantdb蛋白质二维凝胶电泳数据库蛋白质二维凝胶电泳数据库lWORLD-2DPAGE-Acompleteindexof2D-P

14、AGEdbandserverslPhoretixlinks-Phoretixpageoflinksto2Dgeldb3、信号传导及蛋白质、信号传导及蛋白质-蛋白质相互作蛋白质相互作用相关数据库用相关数据库lDIP-DbofInteractingProteinslINTERACT-Protein-ProteininteractiondblProNet-Protein-ProteininteractiondblCANSITE-SignalTransductions信号信号传导WeblSPAD-SignalingpathwaydblCSNDB-CellSignalingNetworksdbDNA和蛋

15、白质相互作用数据库和蛋白质相互作用数据库lDPInteract-DNA-Proteinsinteractionsdb特定基因或蛋白质的数据库特定基因或蛋白质的数据库lAAA-AAAfamilyofATPasesserverAcetylcholinesteraseslALDH-Aldehydedehydrogenase醛脱氢酶,l醛氧化酶genesuperfamilydblAminoacyl-tRNAsynthetasesinSWISS-PROT-Listofaminoacyl-tRNAsynthetasesinSWISS-PROTlAARSDB-Aminoacyl-tRNAsynthetase

16、sdblAllergensinSWISS-PROT-Nomenclatureandindex命名和索引ofallergens过敏原inSWISS-PROT特定基因或蛋白质的数据库特定基因或蛋白质的数据库lAMSDb-Antimicrobialsequencesdb抗菌lAntibodyresourcepage-LinkstoantibodyrelatedWebresources抗体lAustralianvenomandtoxindb澳大利亚蛇毒lBacillusthuringiensistoxinspecificitydbBtlTFII-Basaltranscriptionfactors转录子

17、lBloodgroupantigensinSWISS-PROT血型抗原lBCGD-BreastcancergenesdbfromMBCR乳癌lBRENDA-Dbofenzymefunctionaldata特定基因或蛋白质的数据库特定基因或蛋白质的数据库lEF-handCaBP-EF-handcalcium-bindingproteinsdblCAZy-Carbohydrate-ActiveenZYmesWebsitelCBSdomainCystathionine胱硫醚,丙氨酸丁氨酸硫醚BetaSynthasedomainWWWpagelCDantigensinSWISS-PROT-Nomenc

18、latureforsurfaceproteinsofhumanleucocytes白血球CD特定基因或蛋白质的数据库特定基因或蛋白质的数据库lCDantigensinPROW-DatabaseoninformationaboutCDantigenslChaperonin-InformationonGroELandGroESchaperoninslConotoxins-InformationonconotoxinsfromaWebsiteonconeshellsl。etc。4、糖类相关数据库、糖类相关数据库lCarbBank-ComplexCarbohydrateStructureDatabas

19、elGlycoSuiteDB-DbofglycanstructureslTGN-TheGlycoscienceNetworklFCCA-ForumCarbohydratesComingofAgelCARBHYD-CarbohydrateinformationWWWsiteslMonosacharidebrowser-SpacefillingFischerprojectionformonosaccharides单糖5、蛋白质翻译后修饰相关数据库、蛋白质翻译后修饰相关数据库 lO-GlycBase-O-glycosylated使蛋白质糖基化proteinsdblPhosphoBase-Phosph

20、orylation磷酸化作用sitesdblRESID-DbofAminoAcidModifications6、基因表达数据库lASDB-Proteinproductsandexpressionpatternsofalternatively-splicedgeneslAxeldb-GeneexpressioninXenopuslBodyMap-HumanandmousegeneexpressiondatalEpoDB-GenesexpressedinvertebrateRBClFlyView-Drosophiladevelopmentandgenetics果蝇lGeneExpressionDa

21、tabaseGXD-Mousegeneexpressionandgenomics鼠lKidneyDevelopmentDatabaseKidney肾developmentandgeneexpression6、基因表达数据库、基因表达数据库 lMAGEST-AscidianHalocynthiaroretzigeneexpressionpatternslMouseAtlasandGeneExpressionDatabase-Spatially-mappedgeneexpressiondatalPEDB-Normalandaberrantprostate正常、异常前列腺geneexpression

22、lToothDevelopmentDatabase-GeneexpressionindentaltissuelTRIPLES-TRansposon-InsertionPhenotypes,LocalizationandExpressioninSaccharomyces酵母7、人类基因突变及疾病相关数据库、人类基因突变及疾病相关数据库lHMGD-HumanGeneMutationdblSVD-SequencevariationdblHGBASE-HumanGenicBi-AllelicSequencesdblTheSNPconsortiumldbSNP-Humansinglenucleotide

23、polymorphismSNPdb单核苷酸多态性数据库lListofmutationdatabasesfromOMIMlListofmutationdatabasesfromIMTFinland人类基因突变及疾病相关数据库人类基因突变及疾病相关数据库lADB-AlbinismdbMutationsinhumangenescausingalbinism白化病lAlpha-glucosidase-Informationabouthumanacidalpha-glucosidaseGSD-IIlARmutations-HumanandrogenreceptormutationdblAntithrom

24、binmutationdb抗凝血突变lAsthmaandAllergygenedb哮喘和过敏lBIOMDB-Dbofmutationscausingtetrahydrobiopterindeficiencies缺乏四氢生物蝶呤lBLMbase-HumanBLMmutationdbBloomsnydrom7、人类基因突变及疾病相关数据库、人类基因突变及疾病相关数据库lBTKbase-HumanBTKmutationdbX-linkedagammaglobulinemia血中丙球蛋白贫乏lCD40Lbase-HumanCD40ligandmutationdblCOL1/3mutation-Huma

25、nTypeIandIIIcollagenmutationdblCFTRmutation-HumancysticfibrosismutationdbCFTR囊肿性纤维化,属遗传性胰腺病lEMDdb-HumanEmerinEMDmutationdbEmery-Dreifussmusculardystrophy肌肉萎缩症lKMeyeDB-Eyediseasegenesdb人类基因突变及疾病相关数据库人类基因突变及疾病相关数据库lFVIImutation-HumanFactorVIImutationdblHAMSTeRS-HumanFactorVIIImutationdbHaemophiliaAlHA

26、eMB-HumanFactorIXmutationdbHaemophiliaB血友病lFBN1mutation-Humanfibrillin1mutationdbMarfansyndromelG6PD-HumanG6PDdeficiencyresourcelGaltmutation-Humangalactose-1-phosphateuridylyltransferasemutationdbGalactosemia人类基因突变及疾病相关数据库人类基因突变及疾病相关数据库lHEXAdb-HumanHexosaminidaseAmutationdbTay-sachsdiseaselIL2RGbas

27、e-HumanIL2RGInterleukin-2receptorgammamutationdbX-SCIDlL1CAMmutation-HumanL1CAMmutationdblLDLRmutation-HumanLDLRmutationdbFamilialhypercholesterolemialLQTSdb-LongQTsyndromedblNCF1base-HumanNCF1mutationdblNCF2base-HumanNCF2mutationdb人类基因突变及疾病相关数据库人类基因突变及疾病相关数据库lNeuromusculardiseaseswebsitelNCL-Neuron

28、alCeroidLipofuscinosesmutationdblOTCase-HumanornithinetranscarbamylaseOTCasewebsitelCytochromeP450allelesnomenclaturelp53mutationdb-UniversityofTokyop53mutationdblGermlinep53mutationdb-UniversityofPraguedbofgermlinep53mutationslPAHdb-HumanphenylalaninehydroxylasePAHmutationdb人类基因突变及疾病相关数据库人类基因突变及疾病相

29、关数据库lPAX6mutation-HumanPAX6mutationdblPrion-PrionandpriondiseasewebsitelRAG1base-HumanRAG1mutationdblRAG2base-HumanRAG2mutationdblRB1base-Humanretinoblastoma-associatedproteinRBmutationdblRetNet-RetinalInformationNetworklRetinaInternationalScientificNewsletter-InformationonRetinalgenes,proteinsanddi

30、seases人类基因突变及疾病相关数据库人类基因突变及疾病相关数据库lTSC-TSCTSC1/TSC2variationdblTSC2-Cardiff-RotterdamTuberousSclerosisTSdbTuberin;TSC2lTGDB-TumorgenedblVMD2mutation-HumanVMD2mutationdblvWFmutation-HumanvonWillebrandfactorvWFmutationdblWRN-HumanWRNmutationdbWarnerdiseaselWT1mutation-HumanWT1mutationdblX-ALDmutation-

31、HumanABCD1mutationdb8、进化相关数据库及资源、进化相关数据库及资源 lClustersofOrthologousGroupsCOG-Phylogeneticclassificationofproteinsfrom21completegenomeslXREFdb-Cross-referencingofmodelorganismgeneticswithmammalianphenotypeslTreeBASE-RelationaldbofphylogeneticinformationlTheTreeoflife-CollectionofWWWpagesonphylogenyand

32、biodiversityoforganismsphylogeny.arizona.edu/tree/8、专利数据库lDPD-DNAPatentdblAgPatents-AgriculturalBiotechnologypatentsfromtheUSDA农业生物技术专利lUSPTOpatentdb-USAPatentandTrademark商标OfficepatentdblEspcenet-PatentinformationdatabasefromtheEuropeanPatentOfficeworldwidecoveragelTheDelphionIntellectualPropertyNe

33、tworkIPNforsearching,viewing,andanalyzingpatentdocuments.9、资源目录效力器或网页lBioCatalog-TheBioCatalogatEBIlYellowBAGI-BioAccessGuidetotheInternetatHoustonUniversitylSoftwarelibraryfromGenamicslDBCAT-DatabasescatalogatINFOBIOGENlMBDL-MolecularBiologyDatabaseListlAmosWWWlinkspagelNucleicAcidsResearchdatabase

34、issueHuman与人类基因有关的数据库lCEPH-genotypedatabaselCEPHhomepage-aresearchlaboratorywhichconstructsmapsofthehumangenomelGeneMap99-AGeneMapoftheHumanGenomeNCBIlOMIM-OnlineMendelianInheritanceinManlGENATLAS-HumangenesatlaslGeneClinics-MedicalgeneticsknowledgebaselGDB-HumangenesandgenomicmapslGeneCards-Dbinteg

35、ratinginformationonhumangenesHumanlUDB-UnifieddbforHumangenomemappinglEnsembl-HumangenomeannotationssitelUCSChumangenomeworkingdraftlTIGRHGI-TIGRHumanGeneIndexlHumanBACEndsDatabase-Non-redundanthumanBACendsequenceslHsUniGene-HumantranscriptsinGenBankESTclusterslSTACK-SequenceTagAlignmentandConsensus

36、KnowledgebaseDbofconsensushumanESTsHumanlAllgenes.org-Humanpredictedgeneindex/cataloglGenLink-HumangeneticsresourcelGENOTK-HumancDNAdblHUGE-HumanUnidentifiedGene-EncodedlargeproteinscDNAKIAA.lCGAP-CancerGenomeAnatomyProjectlSCDb-StemcelldbHumanlHuGeMap-HumangenomegeneticandphysicalmapdatalG3-RH-Stan

37、fordG3andTNGradiationhybridmapslGB4-RH-Genebridge4GB4humanradiationhybridmapslRadiationHybridDatabase-RadiationhybridmapdataHumanchromosome18lChr1-Humanchromosome1atRockefellerUniversityMirroratEBIlChr3-Humanchromosome3dbattheUniversityofTexasHealthScienceCenterlChr7-Humanchromosome7dbatOntariosHosp

38、italforSickChildrenlChr8SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome8Humanchromosome911lChr9SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome9lChr9-Humanchromosome9dblChr10SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome10lGTCChr10data-Humanchromosome10datafromGenome

39、TherapeuticsCorporationlChr11SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome11l11DB-Humanchromosome11dbatImperialCollegeU.K.Humanchromosome1216lChr12SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome12lChr13-Humanchromosome13dbatColumbialChr14SWISS-PROTlist-LinkstoSWISS-PROTentrie

40、sfromhumanchromosome14lChr15SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome15lChr15UBC-Humanchromosome15WWWpageatUBClChr16SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome16Humanchromosome1619lChr16LANL-Humanchromosome16dbatLosAlamosNationalLaboratorylChr16TIGR-Humanchromosome16d

41、batTIGRlChr17SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome17lChr18SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome18lChr18-Humanchromosome18atBostonChildrensHospitallChr19SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome19Humanchromosome2022lChr20SWISS-PROTlist-Linkst

42、oSWISS-PROTentriesfromhumanchromosome20lChr21SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome21lChr21atRIKEN-Humanchromosome21genomesiteatRIKENJapanlChr21atERI-Humanchromosome21genomicsequencedbfromtheEleanorRooseveltInstitutelChr22SWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosome

43、22lChr22atSanger-SangerCenterchromosome22projectlChr22atHGC-Humangenomecenterforchromosome22HumanchromosomeXY人类XY染色体lChrXSWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosomeXlIXDB-IntegratedXchromosomedblChrYSWISS-PROTlist-LinkstoSWISS-PROTentriesfromhumanchromosomeYVertebrates脊椎动物lOMIA-Online

44、MendelianInheritanceinAnimalslMGI-MouseGenomeInformaticsincludes*MouseGenomeDatabaseMGDMirrorsinAustralia|UK|JapanlTIGRMGI-TIGRMouse*GeneIndexlMmUniGene-MousetranscriptsinGenBankESTclusterslRatMAP-RatgenomedblTIGRRGI-TIGRRatGeneIndexlRnUnigene-RattranscriptsinGenBankESTclustersl以上与老鼠有关的基因数据库Vertebra

45、teslBovBASE-BovinegenomedbinUKlBOVMAP-BovinegenomedbinFrance牛lArk-Catcatgenomedb猫lHorseBASE-Horsegenomedb马lDGP-DogGenomeProject狗lPiGBASE-Piggenomedb猪lSheepBASE-SheepgenomedbalsoknownasSheepMapMirrorinUK羊lMIS-MendelianInheritanceinSheeplChickGBASE-Chickengenomedb鸡VertebrateslFugu-HGMPResourceCentreFu

46、guProjectFugurubripes河豚lMedakafish-MekadafishOryziaslatipesserverlArk-Tilapia-Tilapia罗非鱼mossambicagenomedblThefishnet-Zebrafishserver斑马鱼lFishBase-GlobalinformationsystemonfishesMitochondrionandchloroplast线立体和叶绿体lGOBASE-OrganelleGenomeDatabaselMitoDat-MendelianInheritanceandtheMitochondriondbmitochon

47、drialnucleargeneslMITOMAP-HumanmitochondrialgenomedblMmtDB-MetazoamitochondrialDNAvariantsdb后生动物lMitBASE-IntegratedmitochondrialDNAdblMitBASE-Pilot-DbofS.cerevisiaenucleargenesinvolvedinmitochondrialbiogenesislHvrBase-PrimatesmtDNAcontrolregionsequencescompilationMitochondrionandchloroplastlMOUSE-Mi

48、tochondrialandOtherUsefulSEquenceshumanandapesmit.DNAdblMITOP-Mitochondrialproteins,genesanddiseaseslAMmtDB-MetazoanmitochondrialDNAsequencesInsects昆虫昆虫lDrosophilaSWISS-PROTlist-LinkstoDrosophilaSWISS-PROTentries果蝇lFlyBase-DrosophilageneticandmoleculardbMirroratEBIlFlyView-DrosophilaimagedblGIFTS-Ge

49、neInteractionsintheFlyTrans-WorldServerlFlyNets-DbofmolecularinteractionsinDrosophilamelanogasterlSOS-DGBD-DbofDrosophilaDNAsequencesannotatedwithregulatorybindingsiteslMosquitoGenomics蚊子Invertebrates无脊柱动物无脊柱动物lWormBase-C.elegansdbMirroratSangerlC.elegansWWWserver-atUniversityofTexasSouthwestern线虫lA

50、CeDb-CaenorhabditiselegansdblC.elegansMitochondrialDirectory-DataonC.elegansgenesformitochondrialproteinslC.elegansEST-C.elegansESTdbfromJapanYujiKoharasgrouplC.elegansSWISS-PROTlist-LinkstoC.elegansSWISS-PROTentrieslWormPep-C.elegansproteinsdblWormPD-C.elegansproteindbInvertebrateslDictysteliumGeno

51、meSequencingprojectatBCMlDictyosteliumdiscoideumgenomeprojectatIENAlDictyDb-DictyosteliumdiscoideumdblDicty_cDB-DictyosteliumdiscoideumcDNAprojectlConeshellsWebsitelParasitegenomesdbandresources寄生虫lParasitegenomesWWWsitelPlasmoDB-P.falciparumgenomedbInvertebrateslMalaria-WHO-MalariadbfromWHOlP.falci

52、parumSanger-P.falciparumgenomeprojectatSangerlPFDB-PlasmodiumfalciparumGenomedblP.falciparum-PlasmodiumfalciparumGeneSequenceTagproject疟原虫InvertebrateslMAD-MalariaAntigendblMalariaparasitemetabolicpathwayslLGN-LeishmaniaGenomeNetwork利什曼虫lTrypanosomabruceigenomeproject锥体虫lTrypanosomacruzigenomeprojec

53、tlkDNA-KinetoplastMinicircleSequencedbPlants植物类植物类lNAL-AGIS-AccesstomanyplantgenomedatabasesattheNationalAgriculturalLibrarylDemetersgenomes-AccesstomanyplantgenomedatabasesattheUSDA-ARSlMendel-PlantgenenomenclaturedatabasefromCPGNlAtDB-ArabidopsisthalianagenomedatabaselTAIR-TheArabidopsisInformatio

54、nResourcelMATDB-MIPSArabidopsisthalianadblTIGRAtGI-TIGRArabidopsisthalianaGeneIndexlAGR-ArabidopsisGenomeResourcePlantslBeanGenes-Beansgenomedb豆lBeanRef-BeansgenomedbandotherresourceslChlamyDB-Chlamydomonasreinhardtiigenomedb衣藻lCropNet-Genomemappingincropplants农作物lCottonDB-Cottongenomedb棉花lMaizeDb-M

55、aizegenomedb玉米lINRAMaize-INRAMaizegenomedblZmDB-MaizegenomedatabaselPisumsativumpeawebsite豌豆Plants-Rice lRGP-RiceGenomeResearchProgram水稻lRiceGeneslRice-research.org-MonsantoricegenomesitelTIGROsGI-TIGRRiceGeneIndexlTIGRGmGI-TIGRSoybeanGeneIndex大豆lSnapdragonA.majuswebsitelSorghumDB-Sorghumgenomedb高粱l

56、SoyBase-SoybeangenomedbPlantslSoyBasemetabolicdb-MetabolicsubsetofthesoybeangenomedblTIGRLeGI-TIGRTomatoGeneIndex西红柿lDendrome-Foresttreesgenomedb树林植物Fungi 真菌真菌lFGSC-FungalGeneticsStockCenterlFGR-FungalGenomeResourcelYeastSWISS-PROTlist-LinkstoS.cerevisiaeWWWsitesandtoSWISS-PROTentrieslSGD-Saccharomy

57、cesgenomedb酵母lYPD-YeastproteindblMitBASE-Pilot-DbofS.cerevisiaenucleargenesinvolvedinmitochondrialbiogenesis酵母lYeastsnoRNA-YeastsmallnucleolarRNAsdblYTPdb-YeastTransportProteindb酵母lPathCalling-Yeastprotein-proteininteractiondbFungi lAspergilluswebsitelC.albicansSWISS-PROTlist-LinkstoC.albicansWWWsit

58、esandtoSWISS-PROTentrieslCandidaalbicans-CandidaalbicansserverattheUniv.ofMinnesota假丝酵母lNGP-Neurosporacrassagenomeproject脉孢菌lPC-PneumocystiscariniigenomeprojectlS.pombeSWISS-PROTlist-LinkstoS.pombeWWWsitesandtoSWISS-PROTentrieslS.pombeNIH-FissionyeastS.pombeserverattheNIHFungi lPhycomycesWebsite-Res

59、ourcesiteforscientistsworkingonPhycomycesllEMGlib-CompletelysequencedbacterialgenomesandtheyeastgenomeBacteria细菌细菌lICB-IdentificationandClassificationofBacterialWDCM-WorldDataCenterforMicroorganismslListofBacterialNameswithStandinginNomenclaturelMDB-TIGRMicrobialdbl-GenomeinformationbrokerforMicrobi

60、algenomeslHOBACGEN-HomologousBacterialGenesdblComparisonofthetransportcapabilitiesofbacterialgenomes-fromIanPaulsenlBPGD-BacterialpolysaccharidegenedbBacterialBacterialquorumsensinglMicrobeWorld-EducationalsiteonmicrobeslE.coliSWISS-PROTlist-LinkstoE.coliWWWsitesandtoSWISS-PROTentrieslEcoWeb/EcoGene

61、-VerycomprehensiveE.colidblECCE-E.coliCellEnvelopeProteinDataCollectionlECDC-E.colidbcollectionlEcoCyc-EncyclopediaofE.coligenesandmetabolismBacteria lGenProtEC-E.coligenomeandproteomedblColibri-E.coligenomedbfromPasteurInsitutelECGC-E.coliGenomeCenteratWisconsinUniversity大肠杆菌lDDBJE.coli-E.colihomep

62、ageatDDBJlB.subtilisSWISS-PROTlist-LinkstoB.subtilisWWWsitesandtoSWISS-PROTentrieslSubtiList-BacillussubtilisgenomicdblNRSub-Bacillussubtilisnon-redundantdbMirrorinJapanBacteria lMicado-MicrobialadvanceddbB.subtilis+E.colipreviouslyknownasMadBaselBSORF-JapaneseserveronB.subtilislA.actinomycetemcomit

63、ans-ActinobacillusactinomycetemcomitansstrainHK1651genomeprojectlB.stearothermophilus-Bacillusstearothermophilusstrain10genomeprojectlB.pertussis-BordetellapertussisgenomeWWWsitelBbDB-TIGRBorreliaburgdorferigenomedbBacterialiBGD-IntegratedBuchneragenomedblB.cepacia-BurkholderiacepaciagenomeprojectlC

64、hlamydia-ChlamydiapneumoniaeandtrachomatislC.muridarum-TIGRChlamydiamuridarumstrainMoPngenomedblC.pneumoniaeAR39-TIGRChlamydiapneumoniaestrainAR39genomedblC.pneumoniaeJ-JapaneseChlamydiapneumoniaestrainJgenomedbBacterialC.acetobutylicum-GTCClostridiumacetobutylicumstrainATCC824datalC.jejuni-Campylob

65、acterjejunistrainNCTC11168genomeWWWsitelC.hutchinsonii-CytophagahutchinsoniigenomeprojectlDrDB-TIGRDeinococcusradioduransstrainR1genomedblD.hafniense-DesulfitobacteriumhafniensegenomeprojectlE.faecium-EnterococcusfaeciumgenomeprojectBacterialF.acidarmanus-FerroplasmaacidarmanusgenomeprojectlF.tulare

66、nsis-FrancisellatularensisgenomeWWWsitelH.influenzaeSWISS-PROTlist-LinkstoH.influenzaeWWWsitesandtoSWISS-PROTentrieslHiDB-TIGRH.influenzaegenomedblHIDC-H.influenzaedbcollectionlH.pyloriSWISS-PROTlist-LinkstoH.pyloriWWWsitesandtoSWISS-PROTentriesBacterialHpDB-TIGRHelicobacterpyloristrain26695genomedb

67、lH.pyloriJ99-AstraHelicobacterpyloristrainJ99genomedblPyloriGene-HelicobacterpylorigenmoicdblMC-1-MagnetococcusMC-1genomeprojectlM.magnetotacticum-MagnetospirillummagnetotacticumgenomeprojectlMycDB-MycobacteriumdblM.lepraeatGTC-GTCMycobacteriumlepraedatalM.lepraeatSanger-SangerCentreM.lepraegenomepr

68、ojectlTubercuList-MycobacteriumtuberculosisstrainH37RvgenomedblMtDB-TIGRMycobacteriumtuberculosisstrainOshkoshgenomedblM.tuberculosisatGTC-GTCMycobacteriumtuberculosisdataBacterialM.tuberculosisatSanger-SangerCentreM.tuberculosisH37RvgenomeprojectlM.tuberculosissecretedproteinslM.tuberculosisstructu

69、ralgenomicsconsortiumlM.genitaliumSWISS-PROTlist-LinkstoM.genitaliumSWISS-PROTentrieslMgDB-TIGRMycoplasmagenitaliumgenomedblM.pneumoniae-MycoplasmapneumoniaegenomeprojectBacteria lN.meningitidisA-SangerCentreNeisseriameningitidisserogroupAstrainZ2491genomeprojectlN.meningitidisB-TIGRNeisseriameningi

70、tidisserogroupBstrainMC58genomedblN.gonorrhoeae-NeisseriagonorrhoeaestrainFA1090genomeprojectlN.europaea-NitrosomonaseuropaeagenomeprojectlN.punctiforme-NostocpunctiformegenomeprojectBacterialP.marinus-ProchlorococcusmarinusgenomeprojectlP.aeruginosaproject-PseudomonasaeruginosagenomeprojectlP.aerug

71、inosadb-PseudomonasaeruginosagenomedblP.fluorescens-PseudomonasfluorescensgenomeprojectlRhizobiumpNGR234aSWISS-PROTlist-LinkstoRhizobiumplasmidpNGR234aSWISS-PROTentrieslRhizobiumpNGR234aanalysislRsGDB-RhodobactersphaeroidesgenomedblR.sphaeroides-RhodobactersphaeroidesgenomeprojectBacterialR.palustri

72、s-RhodopseudomonaspalustrisgenomeprojectlR.prowazekiiSWISS-PROTlist-LinkstoprowazekiiSWISS-PROTentrieslR.prowazekii-RickettsiaprowazekiistrainMadridEgenomeprojectlS.typhimuriumSWISS-PROTlist-LinkstoS.typhimuriumSWISS-PROTentrieslRhizoBase-SinorhizobiumlotigenomeprojectlS.meliloti-Sinorhizobiummelilo

73、tigenomeprojectBacterialS.aromaticivorans-SphingomonasaromaticivoransgenomeprojectlS.aureus-StaphylococcusaureusstrainNCTC8325genomeprojectlS.mutans-StreptococcusmutansstrainUAB159genomeprojectlS.pyogenes-StreptococcuspyogenesstrainM1genomeprojectlPCC6803SWISS-PROTlist-LinkstoSynechocystisPCC6803SWI

74、SS-PROTentrieslCyanoBase-SynechocystisPCC6803dbBacterialSynechococcus-MarinesynechococcusgenomeprojectlT.fusca-ThermomonosporafuscagenomeprojectlTmDB-TIGRThermotogamaritimagenomedblTpDB-TIGRTreponemapallidumgenomedblT.erythraeum-TrichodesmiumerythraeumgenomeprojectlU.urealyticum-Ureaplasmaurealyticu

75、mgenomeWWWsitelVcDB-TIGRVibriocholeraegenomedblX.citri-XanthomonascititigenomeWWWsiteBacterialX.fastidiosa-XylellafastidiosagenomeWWWsitelX.fastidiosaatDOE-DOEXylellafastidiosagenomeprojectlY.pestis-YersiniapestisgenomeWWWsitelPhytophthoraGenomeInitiativeDatabase-OomycetesequencesandgeneticmapsArcha

76、ea古细菌古细菌lA.pernix-AeropyrumpernixK1genomedblAfDB-TIGRArchaeoglobusfulgidusgenomedblHalobacteriumNRC-1-HalobacteriumstrainNRC-1genomeprojectlM.thermoautotrophicum-MethanobacteriumthermoautotrophicumgenomedblM.jannaschiiSWISS-PROTlist-LinkstoM.jannaschiiSWISS-PROTentrieslMjDB-TIGRMethanococcusjannasch

77、iigenomedblMjFdb-MethanococcusjannaschiifunctionsdbArchaea lM.barkeri-MethanosarcinabarkerigenomeprojectlP.abyssi-PyrococcusabyssigenomeprojectanddblP.horikoshii-PyrococcushorikoshiiOT3dblSGP-SulfolobussolfataricusstrainP2genomeprojectlT.acidophilum-ThermoplasmaacidophilumgenomeprojectViruses 病毒病毒lA

78、llthevirologyontheWWW-linkstovirologyWWWserversbyDavidM.SanderlICTVdB-UniversalvirustaxonomydblAVIS-AnimalVirusInformationSystemlPlantsVirusesOnline-InformationonplantviruseslHIV-HIVandrelatedspeciesdblHPV-HumanpapillomavirusesdblInfluenzasequencedblPicornavirus-Picornavirushomepageandaccesstodb小核糖核酸病毒lTobamoviruses致谢!l参考“中国科学院上海生命科学研讨院生物信息中心 网页编写l地址 biosino.org/pages/终了l请提问!l谢谢大家选修“生物信息学!l请提珍贵意见!lLiujipingscau.edu

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