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1、Gene Targeting GT是指在基因组的原位实现对基因的定点突变、定 点整合、基因置换及基因修复等。对基因功能的研 究提供了极大的方便，比基因的反义抑制和RNAi更 直观可靠，尤其在鉴定基因家族成员的功能时更是 如此。Gene targeting (GT) refers to the alteration of a specific DNA sequence in an endogenous gene at its original locus in the genome by homologous recombination (HR) and, often, to the conve
2、rsion of the endogenous gene into a designed sequence, i.e. base changes or gene disruptions through gene replacements. Two approaches for GT： 1. Homologous recombination-dependent gene targeting, e.g. tobacco(ALS乙酰乳酸合成酶 ) , Arbidopsis(PPO， protoporphyrinogen oxidase原卟啉原氧化酶 ) and rice(Waxy); 2. Chim
3、eric RNA/DNA oligonucleotide-directed targeted point mutations, e.g. AHAS(乙酰羟酸合成酶) in maize and ALS in tobacco and rice.同源重组介导的GT在细菌、真菌、低等藻类和 动物中已成功广泛的应用，而在高等植物的应 用研究进展缓慢，重组率很低（1%），仅为 非同源重组的万分之一。GT在植物中的进展Paszkowski等1988年首次报道在烟草中作的基因打 靶的尝试。Kammerer和Cove(1996)首次在小立碗藓中实现了基 因的同源重组,打靶效率达到90,近似于酵母的95 。 Te
4、rada 等（2002；2007）利用高效正负向筛选标记 筛选同源重组子的策略,白喉毒素基因DT-A作负向筛选标记,成功的在水稻Waxy或Adh2中整合进一个潮霉 素抗性基因htp，实现对靶基因的敲除。打靶效率达 到1。打靶的效率与DNA断裂双链的修复过程中倾向于同源 重组还是非同源重组有很大的关系。Copyright 2007 American Society of Plant BiologistsTerada, R., et al. Plant Physiol. 2007;144:846-856Integration events of a transgene associated wit
5、h homology-dependent GT with positive-negative selectionCopyright 2007 American Society of Plant BiologistsTerada, R., et al. Plant Physiol. 2007;144:846-856Strategy for the modification of the Adh locus提高打靶效率的方法通过表达内源或外源同源重组相关的酶提高同 源重组率,如RAD、RecQ和RecA等。引入重组酶体系Cre/lox。锌指核酶ZFNs（zinc finger nucleases）
6、引 入定点双链断裂。ZFN由一个DNA识别域和一个 非特异性核酸内切酶构成,具有很强的特异性 和可塑性。Zinc-finger nucleases. (a) Zinc fingers are depicted that recognize nucleotide triplets of a target sequence. Multiple fingers can be joined together to create zinc-finger proteins that recognize extended sequence patterns. (b) Zinc-finger domains
7、are fused to a type II restriction endonuclease such as FokI. (c) When the FokI monomers are brought into proximity by DNA binding, a functional nuclease is created that cleaves the target sequence.ZFN homodimer binding to DNA. Shown is a three-finger zinc finger linked to the Fn domain through a fl
8、exible peptide linker. At the N-terminus of each ZFN resides a nuclear localization signal (NLS). The Fn domain is linked to the C-terminal finger (in this case finger 3) of the zinc finger domain. For most efficient cleavage there is no amino acid linker between the zinc finger domain and the Fn do
9、main. The binding sites are arranged in an inverted orientation so that one ZFN is making most of its major contacts with one strand of DNA, whereas the other ZFN is making most of its major contacts with the other strand of DNA. Between the two binding sites is a nucleotide spacer (NNN.), the seque
10、nce of which does not seem to be important. This figure is a modification of Figure 2c from Jantz et al.47. Nature Biotechnology 23, 967 - 973 (2005) Molecular reagents for measuring homologous recombination. (a) pDW1273 encodes a functional GUS:NPTII reporter gene. AI denotes the artificial intron
11、within the GUS coding sequence. The ColE1 replicon and Ampr gene are for recovery of the integrated construct by plasmid rescue. The GUS:NPTII coding sequence in pDW1363 has a 600 bp deletion that includes GUS and NPTII coding sequences critical for function (mutant forms of GUS and/or NPTII are ind
12、icated by lower-case letters). A Zif268 recognition site (depicted in Figure 1) is inserted at the site of the deletion. The Hygr marker functions in plants and can be used to select cells carrying the reporter construct. Filled triangles depict the left and right borders of the T-DNA. Open arrows i
13、ndicate the primers used for the PCR reactions in Figure 4. The donor DNA, pDW1269, lacks sequences 5 of the artificial intron and is used to repair the GUS:NPTII reporter in pDW1363 by homologous recombination. The donor DNA has a diagnostic XhoI restriction site. (b) The target gene and donor DNA
14、are shown undergoing recombination. Numbers adjacent to the open arrows indicate the size of expected PCR products. The length of homology between donor and target is given below the donor DNA.Schematic of the target reporter and zinc finger recognition sequences. a Target reporter construct with ta
15、ndem, overlapping, partial gfp gene fragments, a 3 pat selectable marker gene fragment, left and right homologous sequences and zinc finger binding sites. b Recognition sequences for ZFN-1 and ZFN-2. Outline of zinc finger nuclease (ZFN) functional assays and their vector systems. The step-by-step c
16、omprehensive analysis of novel ZFNs is composed of four distinct assays (left panel), each based on monitoring ZFN activity using a defined set of vectors (right panel). The in vitro digestion assay tests the digestion activity of an Escherichia coli-expressed ZFN on its recognition site cloned on a target vector. The T- DNA repair assay requires the assembly of a dual-expression cassette on an Agrobacterium tumefaciens binary v
